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software [2009/03/14 18:12]
admin
software [2016/01/04 14:51] (current)
gaou
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 ====== Download ====== ====== Download ======
  
 +===== lightweight version =====
 +
 +  * [[http://​search.cpan.org/​search?​query=Glite|Bio::​Glite (available at CPAN)]]
 +
 + This is a lightweight API version (i.e. w/o Shell or other interfaces) utilizing G-language REST web service. The source code is less than 100KB, requires very limited amount of RAM/CPU usage. Installation is very simple using cpan:
 +
 +  sudo cpan Bio::Glite
 +
 +Note that you need to use "​load"​ for genome loading instead of "new G", and $gb->​seq() for retrieving sequence data instead of "​$gb->​{SEQ}"​. ​
 ===== standard Perl package & source code (for all UNIX) ===== ===== standard Perl package & source code (for all UNIX) =====
  
-  * [[https://​sourceforge.jp/​projects/​glang/​files/​|v.1.8.(tar ball package)]]+  * [[https://​sourceforge.jp/​projects/​glang/​files/​|v.1.9.(tar ball package)]]
  
 This is a standard CPAN-style installer. Just do the following: This is a standard CPAN-style installer. Just do the following:
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   make   make
   sudo make install   sudo make install
 +
 +Cutting-edge development version is available at following URL:
 +
 +   * [[http://​www.g-language.org/​data/​g-language/​]]
 +
 +To download everything,
 +
 +   wget -R http://​www.g-language.org/​data/​g-language/​
  
 ===== for MacOS X 10.5 (Leopard) Intel ===== ===== for MacOS X 10.5 (Leopard) Intel =====
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 > If you want to use it in your Terminal, set the environmental variable as follows: ​ > If you want to use it in your Terminal, set the environmental variable as follows: ​
 > export PATH="/​usr/​local/​g-language/​bin:​$PATH" ​ > export PATH="/​usr/​local/​g-language/​bin:​$PATH" ​
- 
-==== for MacOS X Tiger ==== 
-  * [[http://​www.g-language.org/​data/​G-languageGAE-1.6.10-MacOSX-Tiger-Intel.dmg|v.1.6.10 binary package (.dmg)]] 
- 
-Note that this is an older version. ​ 
  
  
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 > By default KNOB runs in Japanese environment. To use KNOB in English environment,​ type the following when booting. > By default KNOB runs in Japanese environment. To use KNOB in English environment,​ type the following when booting.
 >> ​    ​knoppix lang=en >> ​    ​knoppix lang=en
- 
- 
- 
- 
 ===== Older Versions ===== ===== Older Versions =====
- +  * [[http://​sourceforge.jp/​projects/​glang/​releases/?​package_id=6163|older versions > v.1.6.9 are available here.]] 
-  * [[http://​bioinformatics.org/​project/​filelist.php?​group_id=133|older versions are available here.]] +  * [[http://​bioinformatics.org/​project/​filelist.php?​group_id=133|older versions ​< v.1.6.9 ​are available here.]] 
 +  * [[http://​www.g-language.org/​data/​G-languageGAE-1.6.10-MacOSX-Tiger-Intel.dmg|v.1.6.10 binary package (.dmg) for MacOS X Tiger]]
  
  
software.1237054370.txt.gz · Last modified: 2014/01/18 07:44 (external edit)