User Tools

Site Tools


optimization

Differences

This shows you the differences between two versions of the page.

Link to this comparison view

Both sides previous revision Previous revision
Next revision
Previous revision
optimization [2010/01/20 18:42]
admin
optimization [2014/01/18 07:44] (current)
Line 2: Line 2:
 <​code>​ <​code>​
 lib/​G/​IO/​FastaI.pm lib/​G/​IO/​FastaI.pm
-</code>+lib/G/​IO/​FastQI.pm
  
 +lib/​G/​Shell/​EUtils.pm
 +lib/​G/​Shell/​Log.pm
 +lib/​G/​Shell/​Help.pm
 +
 +lib/​G/​DynamicLoader.pm
 +</​code>​
 ===== deprecated ===== ===== deprecated =====
 <​code>​ <​code>​
 +lib/​G/​Seq/​COMGA.pm
 lib/​G/​Seq/​FreeEnergy.pm lib/​G/​Seq/​FreeEnergy.pm
 lib/​G/​Seq/​ImaGene.pm lib/​G/​Seq/​ImaGene.pm
 lib/​G/​Seq/​Markov.pm lib/​G/​Seq/​Markov.pm
 +lib/​G/​Seq/​PathwayAlignment.pm
 lib/​G/​System/​BAS.pm lib/​G/​System/​BAS.pm
 lib/​G/​System/​CHI.pm lib/​G/​System/​CHI.pm
Line 18: Line 26:
 lib/​G/​SystemsBiology/​Interaction.pm lib/​G/​SystemsBiology/​Interaction.pm
 lib/​G/​SystemsBiology/​KEGG.pm lib/​G/​SystemsBiology/​KEGG.pm
 +lib/​G/​Tools/​Alignment.pm
 lib/​G/​Tools/​Literature.pm lib/​G/​Tools/​Literature.pm
 +lib/​G/​Tools/​KEGG_API.pm
 lib/​G/​Tools/​Mapping.pm lib/​G/​Tools/​Mapping.pm
 lib/​G/​Tools/​Blast.pm lib/​G/​Tools/​Blast.pm
 lib/​G/​Tools/​Cap3.pm lib/​G/​Tools/​Cap3.pm
 lib/​G/​Tools/​Fasta.pm lib/​G/​Tools/​Fasta.pm
 +lib/​G/​Tools/​GlimmerM.pm
 lib/​G/​Tools/​HMMER.pm lib/​G/​Tools/​HMMER.pm
 +lib/​G/​Tools/​PEC.pm
 lib/​G/​Tools/​Repeat.pm lib/​G/​Tools/​Repeat.pm
 lib/​G/​Tools/​SIM4.pm lib/​G/​Tools/​SIM4.pm
 +lib/​G/​Tools/​EMBOSS.pm
 +lib/​G/​Tools/​DotE.pm
 +lib/​G/​Inspire.pm
 </​code>​ </​code>​
 +
 ====== work in progress ====== ====== work in progress ======
 <​code>​ <​code>​
Line 35: Line 51:
 lib/​G/​IO/​GenBankI.pm lib/​G/​IO/​GenBankI.pm
 lib/​G/​IO/​EmblI.pm lib/​G/​IO/​EmblI.pm
-lib/​G/​IO/​FastQI.pm 
 lib/​G/​IO/​GenBankO.pm lib/​G/​IO/​GenBankO.pm
 lib/​G/​IO/​Handler.pm lib/​G/​IO/​Handler.pm
Line 41: Line 56:
 lib/​G/​Seq/​Align.pm lib/​G/​Seq/​Align.pm
 lib/​G/​Seq/​AminoAcid.pm lib/​G/​Seq/​AminoAcid.pm
-lib/​G/​Seq/​COMGA.pm 
 lib/​G/​Seq/​Codon.pm lib/​G/​Seq/​Codon.pm
 lib/​G/​Seq/​Consensus.pm lib/​G/​Seq/​Consensus.pm
Line 52: Line 66:
 lib/​G/​Seq/​Util.pm lib/​G/​Seq/​Util.pm
 lib/​G/​Seq/​Primitive.pm lib/​G/​Seq/​Primitive.pm
-lib/​G/​Seq/​PathwayAlignment.pm 
  
-lib/​G/​Shell/​EUtils.pm 
-lib/​G/​Shell/​Help.pm 
-lib/​G/​Shell/​Log.pm 
- 
-lib/​G/​Tools/​DotE.pm 
-lib/​G/​Tools/​Alignment.pm 
 lib/​G/​Tools/​COGs.pm lib/​G/​Tools/​COGs.pm
 lib/​G/​Tools/​GOA.pm lib/​G/​Tools/​GOA.pm
 lib/​G/​Tools/​GPAC.pm lib/​G/​Tools/​GPAC.pm
-lib/​G/​Tools/​GlimmerM.pm 
 lib/​G/​Tools/​Graph.pm lib/​G/​Tools/​Graph.pm
-lib/​G/​Tools/​KEGG_API.pm 
-lib/​G/​Tools/​PEC.pm 
 lib/​G/​Tools/​Statistics.pm lib/​G/​Tools/​Statistics.pm
 lib/​G/​Tools/​WebServices.pm lib/​G/​Tools/​WebServices.pm
 lib/​G/​Tools/​GMap.pm lib/​G/​Tools/​GMap.pm
-lib/​G/​Tools/​EMBOSS.pm 
  
 lib/​G/​Infinity.pm lib/​G/​Infinity.pm
-lib/​G/​Inspire.pm 
 lib/​G/​Messenger.pm lib/​G/​Messenger.pm
-lib/​G/​DynamicLoader.pm 
 lib/G/IO.pm lib/G/IO.pm
  
Line 85: Line 86:
 lib/​SubOpt.pm lib/​SubOpt.pm
 </​code>​ </​code>​
- 
optimization.1264012949.txt.gz ยท Last modified: 2014/01/18 07:44 (external edit)