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optimization [2008/08/13 08:05]
gaou
optimization [2014/01/18 07:44] (current)
Line 1: Line 1:
 ===== optimized ===== ===== optimized =====
 +<​code>​
 lib/​G/​IO/​FastaI.pm lib/​G/​IO/​FastaI.pm
 +lib/​G/​IO/​FastQI.pm
 +
 +lib/​G/​Shell/​EUtils.pm
 +lib/​G/​Shell/​Log.pm
 +lib/​G/​Shell/​Help.pm
 +
 +lib/​G/​DynamicLoader.pm
 +</​code>​
 +===== deprecated =====
 +<​code>​
 +lib/​G/​Seq/​COMGA.pm
 +lib/​G/​Seq/​FreeEnergy.pm
 +lib/​G/​Seq/​ImaGene.pm
 +lib/​G/​Seq/​Markov.pm
 +lib/​G/​Seq/​PathwayAlignment.pm
 +lib/​G/​System/​BAS.pm
 +lib/​G/​System/​CHI.pm
 +lib/​G/​System/​COMGA.pm
 +lib/​G/​System/​FuncD.pm
 +lib/​G/​System/​GEMS.pm
 +lib/​G/​System/​ReL8.pm
 +lib/​G/​SystemsBiology/​BioLayout.pm
 +lib/​G/​SystemsBiology/​Interaction.pm
 +lib/​G/​SystemsBiology/​KEGG.pm
 +lib/​G/​Tools/​Alignment.pm
 +lib/​G/​Tools/​Literature.pm
 +lib/​G/​Tools/​KEGG_API.pm
 +lib/​G/​Tools/​Mapping.pm
 +lib/​G/​Tools/​Blast.pm
 +lib/​G/​Tools/​Cap3.pm
 +lib/​G/​Tools/​Fasta.pm
 +lib/​G/​Tools/​GlimmerM.pm
 +lib/​G/​Tools/​HMMER.pm
 +lib/​G/​Tools/​PEC.pm
 +lib/​G/​Tools/​Repeat.pm
 +lib/​G/​Tools/​SIM4.pm
 +lib/​G/​Tools/​EMBOSS.pm
 +lib/​G/​Tools/​DotE.pm
 +lib/​G/​Inspire.pm
 +</​code>​
  
 ====== work in progress ====== ====== work in progress ======
Line 12: Line 53:
 lib/​G/​IO/​GenBankO.pm lib/​G/​IO/​GenBankO.pm
 lib/​G/​IO/​Handler.pm lib/​G/​IO/​Handler.pm
 +
 lib/​G/​Seq/​Align.pm lib/​G/​Seq/​Align.pm
 lib/​G/​Seq/​AminoAcid.pm lib/​G/​Seq/​AminoAcid.pm
-lib/​G/​Seq/​COMGA.pm 
 lib/​G/​Seq/​Codon.pm lib/​G/​Seq/​Codon.pm
 lib/​G/​Seq/​Consensus.pm lib/​G/​Seq/​Consensus.pm
-lib/​G/​Seq/​FreeEnergy.pm 
-lib/​G/​Seq/​ImaGene.pm 
-lib/​G/​Seq/​Markov.pm 
 lib/​G/​Seq/​Operon.pm lib/​G/​Seq/​Operon.pm
 lib/​G/​Seq/​OverLapping.pm lib/​G/​Seq/​OverLapping.pm
Line 28: Line 66:
 lib/​G/​Seq/​Util.pm lib/​G/​Seq/​Util.pm
 lib/​G/​Seq/​Primitive.pm lib/​G/​Seq/​Primitive.pm
-lib/​G/​Shell/​EUtils.pm +
-lib/​G/​Shell/​Help.pm +
-lib/​G/​Shell/​Log.pm +
-lib/​G/​System/​BAS.pm +
-lib/​G/​System/​CHI.pm +
-lib/​G/​System/​COMGA.pm +
-lib/​G/​System/​FuncD.pm +
-lib/​G/​System/​GEMS.pm +
-lib/​G/​System/​ReL8.pm +
-lib/​G/​SystemsBiology/​BioLayout.pm +
-lib/​G/​SystemsBiology/​DotE.pm +
-lib/​G/​SystemsBiology/​Interaction.pm +
-lib/​G/​SystemsBiology/​KEGG.pm +
-lib/​G/​SystemsBiology/​PathwayAlignment.pm +
-lib/​G/​Tools/​Alignment.pm +
-lib/​G/​Tools/​Blast.pm+
 lib/​G/​Tools/​COGs.pm lib/​G/​Tools/​COGs.pm
-lib/​G/​Tools/​Cap3.pm 
-lib/​G/​Tools/​Fasta.pm 
 lib/​G/​Tools/​GOA.pm lib/​G/​Tools/​GOA.pm
 lib/​G/​Tools/​GPAC.pm lib/​G/​Tools/​GPAC.pm
-lib/​G/​Tools/​GlimmerM.pm 
 lib/​G/​Tools/​Graph.pm lib/​G/​Tools/​Graph.pm
-lib/​G/​Tools/​HMMER.pm 
-lib/​G/​Tools/​KEGG_API.pm 
-lib/​G/​Tools/​Literature.pm 
-lib/​G/​Tools/​Mapping.pm 
-lib/​G/​Tools/​PEC.pm 
-lib/​G/​Tools/​Repeat.pm 
-lib/​G/​Tools/​SIM4.pm 
 lib/​G/​Tools/​Statistics.pm lib/​G/​Tools/​Statistics.pm
 lib/​G/​Tools/​WebServices.pm lib/​G/​Tools/​WebServices.pm
 lib/​G/​Tools/​GMap.pm lib/​G/​Tools/​GMap.pm
-lib/​G/​Tools/​EMBOSS.pm+
 lib/​G/​Infinity.pm lib/​G/​Infinity.pm
-lib/​G/​Inspire.pm 
 lib/​G/​Messenger.pm lib/​G/​Messenger.pm
-lib/​G/​DynamicLoader.pm 
 lib/G/IO.pm lib/G/IO.pm
 +
 lib/​Rcmd/​Clustering.pm lib/​Rcmd/​Clustering.pm
 lib/​Rcmd/​Normality.pm lib/​Rcmd/​Normality.pm
 lib/Rcmd.pm lib/Rcmd.pm
 +
 lib/G.pm lib/G.pm
 lib/​SubOpt.pm lib/​SubOpt.pm
 </​code>​ </​code>​
- 
optimization.1218614733.txt.gz · Last modified: 2014/01/18 07:44 (external edit)