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optimization [2012/08/29 19:57]
admin
optimization [2014/01/18 07:44]
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-===== optimized ===== 
-<​code>​ 
-lib/​G/​IO/​FastaI.pm 
-lib/​G/​IO/​FastQI.pm 
  
-lib/​G/​Shell/​EUtils.pm 
-lib/​G/​Shell/​Log.pm 
-lib/​G/​Shell/​Help.pm 
- 
-lib/​G/​DynamicLoader.pm 
-</​code>​ 
-===== deprecated ===== 
-<​code>​ 
-lib/​G/​Seq/​COMGA.pm 
-lib/​G/​Seq/​FreeEnergy.pm 
-lib/​G/​Seq/​ImaGene.pm 
-lib/​G/​Seq/​Markov.pm 
-lib/​G/​Seq/​PathwayAlignment.pm 
-lib/​G/​System/​BAS.pm 
-lib/​G/​System/​CHI.pm 
-lib/​G/​System/​COMGA.pm 
-lib/​G/​System/​FuncD.pm 
-lib/​G/​System/​GEMS.pm 
-lib/​G/​System/​ReL8.pm 
-lib/​G/​SystemsBiology/​BioLayout.pm 
-lib/​G/​SystemsBiology/​Interaction.pm 
-lib/​G/​SystemsBiology/​KEGG.pm 
-lib/​G/​Tools/​Literature.pm 
-lib/​G/​Tools/​KEGG_API.pm 
-lib/​G/​Tools/​Mapping.pm 
-lib/​G/​Tools/​Blast.pm 
-lib/​G/​Tools/​Cap3.pm 
-lib/​G/​Tools/​Fasta.pm 
-lib/​G/​Tools/​GlimmerM.pm 
-lib/​G/​Tools/​HMMER.pm 
-lib/​G/​Tools/​PEC.pm 
-lib/​G/​Tools/​Repeat.pm 
-lib/​G/​Tools/​SIM4.pm 
-lib/​G/​Tools/​EMBOSS.pm 
-lib/​G/​Tools/​DotE.pm 
-lib/​G/​Inspire.pm 
-</​code>​ 
- 
-====== work in progress ====== 
-<​code>​ 
-lib/​G/​DB/​BDB.pm 
-lib/​G/​DB/​Handler.pm 
-lib/​G/​DB/​SDB.pm 
-lib/​G/​IO/​Annotation.pm 
-lib/​G/​IO/​GenBankI.pm 
-lib/​G/​IO/​EmblI.pm 
-lib/​G/​IO/​GenBankO.pm 
-lib/​G/​IO/​Handler.pm 
- 
-lib/​G/​Seq/​Align.pm 
-lib/​G/​Seq/​AminoAcid.pm 
-lib/​G/​Seq/​Codon.pm 
-lib/​G/​Seq/​Consensus.pm 
-lib/​G/​Seq/​Operon.pm 
-lib/​G/​Seq/​OverLapping.pm 
-lib/​G/​Seq/​PatSearch.pm 
-lib/​G/​Seq/​Tandem.pm 
-lib/​G/​Seq/​GenomeMap.pm 
-lib/​G/​Seq/​GCskew.pm 
-lib/​G/​Seq/​Util.pm 
-lib/​G/​Seq/​Primitive.pm 
- 
-lib/​G/​Tools/​Alignment.pm 
-lib/​G/​Tools/​COGs.pm 
-lib/​G/​Tools/​GOA.pm 
-lib/​G/​Tools/​GPAC.pm 
-lib/​G/​Tools/​Graph.pm 
-lib/​G/​Tools/​Statistics.pm 
-lib/​G/​Tools/​WebServices.pm 
-lib/​G/​Tools/​GMap.pm 
- 
-lib/​G/​Infinity.pm 
-lib/​G/​Messenger.pm 
-lib/G/IO.pm 
- 
-lib/​Rcmd/​Clustering.pm 
-lib/​Rcmd/​Normality.pm 
-lib/Rcmd.pm 
- 
-lib/G.pm 
-lib/​SubOpt.pm 
-</​code>​ 
optimization.txt ยท Last modified: 2014/01/18 07:44 (external edit)