User Tools

Site Tools


changelog

Differences

This shows you the differences between two versions of the page.

Link to this comparison view

Both sides previous revision Previous revision
Next revision
Previous revision
changelog [2014/08/19 03:08]
gaou [v.1.8.14 in development]
changelog [2017/03/22 06:54] (current)
gaou [v.1.9.2 in development]
Line 5: Line 5:
 [[optimization|Optimization work in progress list]] [[optimization|Optimization work in progress list]]
  
-===== v.1.8.14    in development ​ =====+===== v.1.9.   in development ​===== 
 +  * added .gbff extension to be interpreted as GenBank format 
 +  * added protein_id shortcut in the G::IO structure 
 +  * updated TogoWS URL 
 +===== v.1.9.1 ​   2016.01.04 ===== 
 +  * bug fix in base_counter 
 +  * fixed a serious bug in the previous revision, where the default codon table was set to be number 25 instead of 1 
 +===== v.1.9.0 ​   2014.11.14 ​ =====
   * added -amino option to to_fasta()   * added -amino option to to_fasta()
   * added -mean option to cumulative()   * added -mean option to cumulative()
   * added -output=>"​f"​ to nucleotide_periodicity()   * added -output=>"​f"​ to nucleotide_periodicity()
 +  * added -table option for Alternative Codon Tables for translate()
   * added w_tai() and -tai option to G::​Seq::​Codon::​cai()   * added w_tai() and -tai option to G::​Seq::​Codon::​cai()
   * added G::​Seq::​GCskew::​coding_density()   * added G::​Seq::​GCskew::​coding_density()
Line 14: Line 22:
   * added G::​Seq::​Util::​refseq2gbk()   * added G::​Seq::​Util::​refseq2gbk()
   * added $gb->​annotate(),​ a wrapper around Restauro-G v.1.5   * added $gb->​annotate(),​ a wrapper around Restauro-G v.1.5
 +  * added Rcmd::​Summary::​summary(),​ a smart statistical summary interface for given data or data set
 +  * added pca, hclust, som, kmeans (subset of Rcmd but exported by default through G) for statistical analysis
   * added G::​Tools::​EMBOSS::​emboss(),​ which can run both EMBOSS and KBWS applications. seqret() is now deprecated.   * added G::​Tools::​EMBOSS::​emboss(),​ which can run both EMBOSS and KBWS applications. seqret() is now deprecated.
   * added an option to insert desired number of '​N'​s between contigs in new G() and load() with '​multiple locus' option.   * added an option to insert desired number of '​N'​s between contigs in new G() and load() with '​multiple locus' option.
changelog.1408417733.txt.gz · Last modified: 2014/08/19 03:08 by gaou